Htftarget database

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August undefined, 2024

WebJan 4, 2024 · TCGA, hTFtarget, and MSigDB databases were employed to identify NF- κ B-related metabolic genes (NFMGs). Based on NFMGs, we used consensus clustering … WebApr 10, 2024 · In addition to exploring and analyzing the genomic and epigenetic regulation mechanism of COPZ1 gene expression, we also analyzed the correlation between COPZ1 expression level and its potential regulated transcription factors. One hundred and seventeen potential transcription factors of COPZ1 were downloaded from the hTFtarget …

Nonparametric single-cell multiomic characterization of trio ...

WebFeb 3, 2024 · The binding TFs of the known marker genes and the chromosome loci of these motifs were found from hTFtarget database. d Visualization of cells by VscAI. Known marker genes (left panel) and motifs related with these marker genes (right panel) were projected onto the same low-dimensional space. The same motifs such as SMAD3 and … WebSep 24, 2024 · The potential transcriptional factors for PD-1 and CTLA-4 were predicted from the hTFtarget online tool [22]. The JASPAR online tool [23] was used to identify the … skew symmetric vector space

S100A12-related partners and TFs. (A) A protein-protein …

WebSep 6, 2024 · In this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7190 ChIP-seq samples of 659 TFs and high … WebApr 20, 2024 · To explore the pathways through which FOXA1 acts on CC, the hTFtarget database was queried. Among all the downstream genes of FOXA1, we found that SIX4 had the largest log2FC value in the GSE63514 database, so we selected SIX4 as the downstream target of FOXA1 in this study (Figure 3(a)). WebApr 1, 2024 · The HOCOMOCO , JASPAR , TRANSFAC v2024 , and TFBSbank databases focus on the collection and discovery of the motif profiles for TFBSs, while TRRUST elucidates TF–target interactions using text mining . hTFtarget is the only currently available database integrating various resources to provide an almost one-stop solution in … skew symmetric rotation matrix

hTFtarget: A Comprehensive Database for Regulations of …

WebWelcome to our hTFtarget. Transcription factors (TFs) as key regulators could modulate the expression of target genes by binding to specific DNA sequences of their promoter (s) or … http://bioinfo.life.hust.edu.cn/hTFtarget#!/ swag clothes onlineWebFeb 1, 2024 · TF SPI1 Regulates the Expression of ADH1B, MYH11, and PLN in Endometriotic Cells. To identify a common upstream regulator of ADH1B, MYH11, and PLN, the hTFtarget database was used to predict the TFs of the three genes. Five TFs, AR, FOXA1, MAFF, MAFK, and SPI1 were identified as common TFs ( Figure 3 A). swag clothes pictures

"WebIn this study, we constructed a database named hTFtarget, which integrated huge human TF target resources (7190 ChIP-seq samples of 659 TFs and high-confidence binding … " - Htftarget database

Htftarget database

Summary of well-known databases related to TF-target …

WebA study has developed a database named hTFtarget by creating a comprehensive TF-target relationship library for humans, which can serve as a useful resource for … WebOct 14, 2024 · The hTFtarget database is a transcription factor database that includes a significant number of human chromatin immunoprecipitation (ChIP) sequencing data sets (7,190 experimental samples) and 659 identified transcription factors. The hTFtarget database was used to find the seven possible upstream transcription factors of …

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WebW3Schools offers free online tutorials, references and exercises in all the major languages of the web. Covering popular subjects like HTML, CSS, JavaScript, Python, SQL, Java, … WebFeb 22, 2024 · Combined with the hTFtarget and Knock-TF databases, TFAP4 was found to potentially transcriptionally activate EGFR, KIAA0652, HSPA5, RAB7A, HIF1A, and LAMP1 . The RNAInter predicted that ELAVL1 had the highest number of potential hub genes . DGIdb showed that SORAFENIB could act on EGFR, HIF1A, and MAPK1 .

WebMay 26, 2024 · To date, several TF databases have been developed to explore this information. For example, TF-target gene regulation databases like TRRUST ( Han et al. , 2024 ), ChIPSummitDB ( Czipa et al. , 2024 ), hTFtarget ( Zhang et al. , 2024 ), SEGreg ( Tang et al. , 2024 ) and FFLtool ( Xie et al. , 2024 ) and databases containing annotation … WebDATABASE hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets Qiong Zhang1,#, Wei Liu1,2,#, Hong-Mei …

WebA study has developed a database named hTFtarget by creating a comprehensive TF-target relationship library for humans, which can serve as a useful resource for researchers in TF regulation and ... WebSep 12, 2024 · Finally, a transcription factor-key gene network was constructed based on ChEA3 platform and hTFtarget database, and a miRNA-key gene network was con …

WebAug 28, 2024 · The hTFtarget database was used to predict the upstream transcription factors of HAS2-AS1 and the JASPAR website was used to predict the binding sites of …

WebSep 1, 2024 · The binding sites of EZH2 on the promoter region of FBP1 were predicted using the hTFtarget database. Cell culture and transfection. LUAD cell lines A549 (BNCC337696), HCC78 (BNCC338064), H1975 (BNCC340345), and normal human bronchial epithelial cell line BEAS-2B (BNCC101953) were purchased from BeNa Culture … skew symmetric matrix conditionWebOct 3, 2024 · The hTFtarget database is a large-scale database collecting most human transcription factors and their experimentally confirmed target genes in multiple organs . In our study, the transcription factors of GSTM2 in colon tissue was searched using the hTFtarget database. skew t capeWebApr 1, 2024 · b Prediction of transcription factor binding site of hTFTARGET database. c Prediction of transcription factor binding site of HumanTFDB database. 41016_2024_276_MOESM2_ESM.jpg (1.8M) GUID: 894234C9-2A50-4FEE-B300-CC2B7CB3B639. Data Availability Statement. All data relevant to the study are included … swag clothes plus sizeWebOct 30, 2024 · Some TF-related databases also provide useful data for TcoFs, such as AnimalTFDB , and ApicoTFdb , which offer basic annotation information for TcoFs. … skew t cclWebMay 11, 2024 · We compared the results which predicted by hTFtarget database with the DEGs identified by microarray analysis. As shown in Figure 3(A,B), there were 24 potential transcriptional regulators of NFATC1 that were altered. We next analyzed the correlation between the 24 transcription factors and NFATC1 (Figure S1). swag cloud9WebhTFtarget整合了699个转录因子的高可信度DNA结合序列，其中包含699个TF的2737个TFBS基序。. hTFtarget采用指数衰减的BETA模型量化转录因子对靶基因的调控能力， … swag clothes storesWebFeb 4, 2024 · Figure 3 S100A12-related partners and TFs.(A) A protein–protein interaction (PPI) network of S100A12 according to STRING database.(B) The correlation between … skew t charts